,"Additionalfile4"
info 时间:2021-03-02 阅读:()
,"GeneticcontentofSPI-21inSalmonellaIIIa62:z4,z23:,"ThisfilepresentsinformationaboutgenecontentandconservedproteindomainsofSPI-21",,,,,,,,,,,,,"BACKTOINFO",,,,,,,"ConserveddomainsofS.
entericaarizonae62:z4,z23:-SPI-21T6SSgeneclusterandcomparisonwithhomologsinthePAI-metVT6SSgeneclusterofEscherichiacoliCFT073",,,,,,,,,,,,"E.
coliCFT073PAI-metV",,"Genome","Protein","Component",,"(Identity,Similarity)*","ORFs","Coordinates(bp)","size(aa)","Class","ConservedDomains",,,,,,,,"SARI_02578","2504768-2505355","195",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02579","2505599-2505850","83",,"Transposaseandinactivatedderivatives(COG2963)",,"SARI_02580","2505951-2506400","149","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02581","2506483-2506794","103",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02582","2506835-2507029","64",,"Noputativeconserveddomainsdetected",,,,"SARI_02583","2507249-2508079","276",,"Transposase,Integrasecoredomain(pfam00665)",,,,"SARI_02584","2507108-2507254","48",,"Noputativeconserveddomainsdetected",,,,"SARI_02585","2508186-2508449","87",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02586","2508556-2508819","87",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02587","2508905-2509060","51",,"Noputativeconserveddomainsdetected",,,,"SARI_02588","2509270-2509638","122",,"Noputativeconserveddomainsdetected",,,,"SARI_02589","2509725-2510504","259",,"Noputativeconserveddomainsdetected",,,,"SARI_02590","2510504-2511394","296",,"Uncharacterizedproteinconservedinbacteria(COG4253)",,,,"SARI_02591","2511324-2511521","65",,"Noputativeconserveddomainsdetected",,,,"SARI_02592","2511552-2512001","149","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02593","2512033-2512410","125",,"Noputativeconserveddomainsdetected",,,,"SARI_02594","2512777-2513073","98",,"Noputativeconserveddomainsdetected",,,,"SARI_02595","2513108-2513761","217",,"Noputativeconserveddomainsdetected",,,,"SARI_02596","2513766-2514233","155",,"Noputativeconserveddomainsdetected",,,,"SARI_02597","2514257-2514736","159",,"Noputativeconserveddomainsdetected",,,,"SARI_02598","2514733-2516697","654",,"Peptidase_M23,PeptidasefamilyM23(pfam01551)",,,"c3393(44%,63%)","SARI_02599","2516748-2519045","765","VgrG","VgrG,uncharacterizedproteinconservedinbacteria(COG3501)",,,"c3401(46%,67%)","SARI_02600","2519050-2519373","107","COG3521","PutativelipoproteincomponentofthetypeVIproteinsecretionsystem(COG3521)",,,"c3402(44%,61%)","SARI_02601","2519528-2519797","89","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02602","2519858-2520184","108",,"Colicin_Pyocin,Colicinimmunityprotein(pfam01320)",,,,"SARI_02603","2520159-2523749","1196","VgrG","VgrG,Uncharacterizedproteinconservedinbacteria(COG3501,DUF2345),C-terminalextensionPyocin_Sdomain(pfam06958)",,,"c3401(48%,70%)","SARI_02604","2523754-2524278","174","COG3521","PutativelipoproteincomponentofthetypeVIproteinsecretionsystem(COG3521)",,,"c3400(61%,72%)","SARI_02605","2524314-2525396","360","COG3520","PredictedcomponentofthetypeVIproteinsecretionsystem(COG3520,DUF1305)",,,"c3400(68%,80%)","SARI_02606","2525360-2527129","589","COG3519","TypeVIproteinsecretionsystemcomponentVasA(COG3519)",,,"c3399(54%,69%)","SARI_02607","2527163-2528782","539","ImpA","ImpA-relatedN-terminal(pfam06812),PredictedcomponentofthetypeVIproteinsecretionsystem(COG3515)",,,"SARI_02608","2528818-2529420","200",,"PASTAdomainofbacterialserine/threoninekinasepknB-likeproteins(cd06577)",,,"SARI_02609","2529536-2529709","57",,"Noputativeconserveddomainsdetected",,,"SARI_02610","2529750-2530934","394",,"UncharacterizedproteinconservedinbacteriaTetratricopeptideregion(COG4676)",,"SARI_02611","2530990-2532003","337",,"Noputativeconserveddomainsdetected","c3398(46%,64%)","SARI_02612","2532006-2535377","1123","IcmF","TypeVIproteinsecretionsystemcomponent,IcmF(COG3523)",,"SARI_02613","2536198-2536308","36",,"Noputativeconserveddomainsdetected",,"SARI_02614","2535370-2536578","402",,"Noputativeconserveddomainsdetected",,"SARI_02615","2536988-2537500","170",,"Noputativeconserveddomainsdetected",,"SARI_02616","2537587-2538201","204",,"Noputativeconserveddomainsdetected",,"SARI_02617","2538198-2538485","95",,"PredictedPeptidoglycandomain(pfam09374)",,"SARI_02618","2538491-2538694","67",,"Noputativeconserveddomainsdetected",,"SARI_02619","2538740-2539600","286",,"Noputativeconserveddomainsdetected",,"SARI_02620","2539587-2541803","738",,"Predictedchitinase(COG3179)",,"SARI_02621","2541829-2542269","146",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02622","2542387-2542779","130",,"Noputativeconserveddomainsdetected",,"SARI_02623","2543015-2543278","87",,"Uncharacterizedconservedprotein(COG4104)",,"SARI_02624","2543411-2544289","292",,"Noputativeconserveddomainsdetected",,"SARI_02625","2544273-2547371","1032",,"Phage-relatedlysozyme(muraminidase)(COG3772),PeptidasefamilyM23(pfam01551)","c3393(45%,66%)","SARI_02626","2547387-2549744","785","VgrG","VgrG,uncharacterizedproteinconservedinbacteria(COG3501)","c3392(71%,80%)","SARI_02627","2549741-2552413","890","ClpV","AAA+superfamilydomains(pfam07724),ATP-bindingsubunitsofClpproteaseandDnaK/DnaJchaperones(COG0542)","c3391(84%,91%)","SARI_02628","2552577-2553068","163",,"Hcp-likeprotein(COG3157,DUF796)","c3389(38%,55%)","SARI_02629","2553071-2554750","559",,"OmpAproteinfamily(pfam00691)","c3388(43%,62%)","SARI_02630","2554750-2555439","229","DotU","TypeVIproteinsecretionsystemcomponentVasF(COG3455)","c3387(53%,69%)","SARI_02631","2555436-2556785","449","COG3522","PredictedcomponentofthetypeVIproteinsecretionsystem(COG3522)","c3386(83%,92%)","SARI_02632","2556798-2558339","513","VipB","PredictedcomponentofthetypeVIproteinsecretionsystem(DUF877,COG3517)","c3385(71%,84%)","SARI_02633","2558381-2558878","165","VipA","PredictedcomponentofthetypeVIproteinsecretionsystem(DUF770,COG3516)",,"SARI_02634","2559425-2559901","158",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02635","2560258-2560524","88",,"Transposase_8,Transposase(pfam01527)",,,,,,,,,,,,,"*Proteinidentityandsimilaritybetweentwofull-lengthproteinswereanalysedwithBLAST(bl2seq:http://www.
ncbi.
nlm.
nih.
gov/blast/Blast.
cgi)",,,,,,,,,,,"BACKTOINFO"
entericaarizonae62:z4,z23:-SPI-21T6SSgeneclusterandcomparisonwithhomologsinthePAI-metVT6SSgeneclusterofEscherichiacoliCFT073",,,,,,,,,,,,"E.
coliCFT073PAI-metV",,"Genome","Protein","Component",,"(Identity,Similarity)*","ORFs","Coordinates(bp)","size(aa)","Class","ConservedDomains",,,,,,,,"SARI_02578","2504768-2505355","195",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02579","2505599-2505850","83",,"Transposaseandinactivatedderivatives(COG2963)",,"SARI_02580","2505951-2506400","149","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02581","2506483-2506794","103",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02582","2506835-2507029","64",,"Noputativeconserveddomainsdetected",,,,"SARI_02583","2507249-2508079","276",,"Transposase,Integrasecoredomain(pfam00665)",,,,"SARI_02584","2507108-2507254","48",,"Noputativeconserveddomainsdetected",,,,"SARI_02585","2508186-2508449","87",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02586","2508556-2508819","87",,"Colicin_Pyocin,Colicinimmunityprotein/pyocinimmunityprotein(pfam01320)",,,,"SARI_02587","2508905-2509060","51",,"Noputativeconserveddomainsdetected",,,,"SARI_02588","2509270-2509638","122",,"Noputativeconserveddomainsdetected",,,,"SARI_02589","2509725-2510504","259",,"Noputativeconserveddomainsdetected",,,,"SARI_02590","2510504-2511394","296",,"Uncharacterizedproteinconservedinbacteria(COG4253)",,,,"SARI_02591","2511324-2511521","65",,"Noputativeconserveddomainsdetected",,,,"SARI_02592","2511552-2512001","149","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02593","2512033-2512410","125",,"Noputativeconserveddomainsdetected",,,,"SARI_02594","2512777-2513073","98",,"Noputativeconserveddomainsdetected",,,,"SARI_02595","2513108-2513761","217",,"Noputativeconserveddomainsdetected",,,,"SARI_02596","2513766-2514233","155",,"Noputativeconserveddomainsdetected",,,,"SARI_02597","2514257-2514736","159",,"Noputativeconserveddomainsdetected",,,,"SARI_02598","2514733-2516697","654",,"Peptidase_M23,PeptidasefamilyM23(pfam01551)",,,"c3393(44%,63%)","SARI_02599","2516748-2519045","765","VgrG","VgrG,uncharacterizedproteinconservedinbacteria(COG3501)",,,"c3401(46%,67%)","SARI_02600","2519050-2519373","107","COG3521","PutativelipoproteincomponentofthetypeVIproteinsecretionsystem(COG3521)",,,"c3402(44%,61%)","SARI_02601","2519528-2519797","89","gp25-like","gp25,gene25-likelysozymefrombacteriophageT4(pfam04965,COG3518)",,,,"SARI_02602","2519858-2520184","108",,"Colicin_Pyocin,Colicinimmunityprotein(pfam01320)",,,,"SARI_02603","2520159-2523749","1196","VgrG","VgrG,Uncharacterizedproteinconservedinbacteria(COG3501,DUF2345),C-terminalextensionPyocin_Sdomain(pfam06958)",,,"c3401(48%,70%)","SARI_02604","2523754-2524278","174","COG3521","PutativelipoproteincomponentofthetypeVIproteinsecretionsystem(COG3521)",,,"c3400(61%,72%)","SARI_02605","2524314-2525396","360","COG3520","PredictedcomponentofthetypeVIproteinsecretionsystem(COG3520,DUF1305)",,,"c3400(68%,80%)","SARI_02606","2525360-2527129","589","COG3519","TypeVIproteinsecretionsystemcomponentVasA(COG3519)",,,"c3399(54%,69%)","SARI_02607","2527163-2528782","539","ImpA","ImpA-relatedN-terminal(pfam06812),PredictedcomponentofthetypeVIproteinsecretionsystem(COG3515)",,,"SARI_02608","2528818-2529420","200",,"PASTAdomainofbacterialserine/threoninekinasepknB-likeproteins(cd06577)",,,"SARI_02609","2529536-2529709","57",,"Noputativeconserveddomainsdetected",,,"SARI_02610","2529750-2530934","394",,"UncharacterizedproteinconservedinbacteriaTetratricopeptideregion(COG4676)",,"SARI_02611","2530990-2532003","337",,"Noputativeconserveddomainsdetected","c3398(46%,64%)","SARI_02612","2532006-2535377","1123","IcmF","TypeVIproteinsecretionsystemcomponent,IcmF(COG3523)",,"SARI_02613","2536198-2536308","36",,"Noputativeconserveddomainsdetected",,"SARI_02614","2535370-2536578","402",,"Noputativeconserveddomainsdetected",,"SARI_02615","2536988-2537500","170",,"Noputativeconserveddomainsdetected",,"SARI_02616","2537587-2538201","204",,"Noputativeconserveddomainsdetected",,"SARI_02617","2538198-2538485","95",,"PredictedPeptidoglycandomain(pfam09374)",,"SARI_02618","2538491-2538694","67",,"Noputativeconserveddomainsdetected",,"SARI_02619","2538740-2539600","286",,"Noputativeconserveddomainsdetected",,"SARI_02620","2539587-2541803","738",,"Predictedchitinase(COG3179)",,"SARI_02621","2541829-2542269","146",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02622","2542387-2542779","130",,"Noputativeconserveddomainsdetected",,"SARI_02623","2543015-2543278","87",,"Uncharacterizedconservedprotein(COG4104)",,"SARI_02624","2543411-2544289","292",,"Noputativeconserveddomainsdetected",,"SARI_02625","2544273-2547371","1032",,"Phage-relatedlysozyme(muraminidase)(COG3772),PeptidasefamilyM23(pfam01551)","c3393(45%,66%)","SARI_02626","2547387-2549744","785","VgrG","VgrG,uncharacterizedproteinconservedinbacteria(COG3501)","c3392(71%,80%)","SARI_02627","2549741-2552413","890","ClpV","AAA+superfamilydomains(pfam07724),ATP-bindingsubunitsofClpproteaseandDnaK/DnaJchaperones(COG0542)","c3391(84%,91%)","SARI_02628","2552577-2553068","163",,"Hcp-likeprotein(COG3157,DUF796)","c3389(38%,55%)","SARI_02629","2553071-2554750","559",,"OmpAproteinfamily(pfam00691)","c3388(43%,62%)","SARI_02630","2554750-2555439","229","DotU","TypeVIproteinsecretionsystemcomponentVasF(COG3455)","c3387(53%,69%)","SARI_02631","2555436-2556785","449","COG3522","PredictedcomponentofthetypeVIproteinsecretionsystem(COG3522)","c3386(83%,92%)","SARI_02632","2556798-2558339","513","VipB","PredictedcomponentofthetypeVIproteinsecretionsystem(DUF877,COG3517)","c3385(71%,84%)","SARI_02633","2558381-2558878","165","VipA","PredictedcomponentofthetypeVIproteinsecretionsystem(DUF770,COG3516)",,"SARI_02634","2559425-2559901","158",,"Tra5,Transposaseandinactivatedderivatives(COG2801)",,"SARI_02635","2560258-2560524","88",,"Transposase_8,Transposase(pfam01527)",,,,,,,,,,,,,"*Proteinidentityandsimilaritybetweentwofull-lengthproteinswereanalysedwithBLAST(bl2seq:http://www.
ncbi.
nlm.
nih.
gov/blast/Blast.
cgi)",,,,,,,,,,,"BACKTOINFO"
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